J3_8IP8_040

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IP8_040 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.127

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8IP8|1|aa|A|41
8IP8|1|aa|G|42
*
8IP8|1|aa|C|437
8IP8|1|aa|G|438
8IP8|1|aa|C|439
8IP8|1|aa|A|440
8IP8|1|aa|A|441
8IP8|1|aa|A|442
8IP8|1|aa|U|443
*
8IP8|1|aa|A|468
8IP8|1|aa|G|469
8IP8|1|aa|U|470

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain eb

40S ribosomal protein uS4

Chain ga

40S ribosomal protein uS12