J3_8IP8_044

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UG*UGUC*GUUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IP8_044 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.106

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8IP8|1|aa|U|1297
8IP8|1|aa|G|1298
*
8IP8|1|aa|U|1307
8IP8|1|aa|G|1308
8IP8|1|aa|U|1309
8IP8|1|aa|C|1310
*
8IP8|1|aa|G|1322
8IP8|1|aa|U|1323
8IP8|1|aa|U|1324
8IP8|1|aa|A|1325
8IP8|1|aa|A|1326

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain fb

40S ribosomal protein uS5

Chain qa

40S ribosomal protein eS17

Chain za

40S ribosomal protein uS2