J3_8IP9_002
3D structure
- PDB id
- 8IP9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 40S ribosome in complex with a tRNAi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCA*UUAUG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8IP9|1|aa|A|1098
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP9_002 not in the Motif Atlas
- Homologous match to J3_4V88_034
- Geometric discrepancy: 0.4071
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8IP9|1|aa|C|1042
8IP9|1|aa|C|1043
8IP9|1|aa|A|1044
*
8IP9|1|aa|U|1084
8IP9|1|aa|U|1085
8IP9|1|aa|A|1086
8IP9|1|aa|U|1087
8IP9|1|aa|G|1088
*
8IP9|1|aa|C|1095
8IP9|1|aa|A|1096
8IP9|1|aa|A|1097
8IP9|1|aa|A|1098
8IP9|1|aa|G|1099
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain cb
- 40S ribosomal protein eS21
- Chain db
- 40S ribosomal protein eS26
- Chain fb
- 40S ribosomal protein uS5
- Chain va
- 40S ribosomal protein uS8
- Chain xa
- 40S ribosomal protein eS27
- Chain za
- 40S ribosomal protein uS2
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