J3_8IP9_011
3D structure
- PDB id
- 8IP9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 40S ribosome in complex with a tRNAi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 8IP9|1|aa|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP9_011 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0699
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8IP9|1|aa|A|41
8IP9|1|aa|G|42
8IP9|1|aa|A|43
8IP9|1|aa|U|44
8IP9|1|aa|U|45
8IP9|1|aa|A|46
8IP9|1|aa|A|47
8IP9|1|aa|G|48
*
8IP9|1|aa|C|435
8IP9|1|aa|G|436
8IP9|1|aa|C|437
8IP9|1|aa|G|438
8IP9|1|aa|C|439
8IP9|1|aa|A|440
8IP9|1|aa|A|441
8IP9|1|aa|A|442
8IP9|1|aa|U|443
*
8IP9|1|aa|A|468
8IP9|1|aa|G|469
8IP9|1|aa|U|470
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain ca
- 40S ribosomal protein eS8
- Chain eb
- 40S ribosomal protein uS4
- Chain ga
- 40S ribosomal protein S23
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