3D structure

PDB id
8IP9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Wheat 40S ribosome in complex with a tRNAi
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UG*UGUC*GUUAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8IP9_014 not in the Motif Atlas
Homologous match to J3_8C3A_085
Geometric discrepancy: 0.0919
The information below is about J3_8C3A_085
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76043.2
Basepair signature
cWW-F-F-F-F-tSS-cWW-cWW
Number of instances in this motif group
3

Unit IDs

8IP9|1|aa|U|1297
8IP9|1|aa|G|1298
*
8IP9|1|aa|U|1307
8IP9|1|aa|G|1308
8IP9|1|aa|U|1309
8IP9|1|aa|C|1310
*
8IP9|1|aa|G|1322
8IP9|1|aa|U|1323
8IP9|1|aa|U|1324
8IP9|1|aa|A|1325
8IP9|1|aa|A|1326

Current chains

Chain aa
18S ribosomal RNA

Nearby chains

Chain fb
40S ribosomal protein uS5
Chain qa
40S ribosomal protein eS17
Chain za
40S ribosomal protein uS2

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