J3_8IP9_014
3D structure
- PDB id
- 8IP9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 40S ribosome in complex with a tRNAi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UG*UGUC*GUUAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP9_014 not in the Motif Atlas
- Homologous match to J3_8C3A_085
- Geometric discrepancy: 0.0919
- The information below is about J3_8C3A_085
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.2
- Basepair signature
- cWW-F-F-F-F-tSS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8IP9|1|aa|U|1297
8IP9|1|aa|G|1298
*
8IP9|1|aa|U|1307
8IP9|1|aa|G|1308
8IP9|1|aa|U|1309
8IP9|1|aa|C|1310
*
8IP9|1|aa|G|1322
8IP9|1|aa|U|1323
8IP9|1|aa|U|1324
8IP9|1|aa|A|1325
8IP9|1|aa|A|1326
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain fb
- 40S ribosomal protein uS5
- Chain qa
- 40S ribosomal protein eS17
- Chain za
- 40S ribosomal protein uS2
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