J3_8IPD_002
3D structure
- PDB id
- 8IPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGA(A2M)CUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8IPD|1|2|G|1641
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IPD_002 not in the Motif Atlas
- Homologous match to J3_5TBW_004
- Geometric discrepancy: 0.1025
- The information below is about J3_5TBW_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8IPD|1|2|U|1531
8IPD|1|2|G|1532
8IPD|1|2|A|1533
8IPD|1|2|A2M|1534
8IPD|1|2|C|1535
8IPD|1|2|U|1536
8IPD|1|2|A|1537
*
8IPD|1|2|U|1622
8IPD|1|2|A|1623
8IPD|1|2|G|1624
*
8IPD|1|2|C|1640
8IPD|1|2|G|1641
8IPD|1|2|A|1642
8IPD|1|2|A|1643
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 4
- GTP-binding protein 4
- Chain M
- 60S ribosomal protein L37
- Chain P
- 60S ribosomal protein L39
- Chain U
- 60S ribosomal protein L15
- Chain m
- 60S ribosomal protein L8
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