J3_8IPX_004

3D structure

PDB id

8IPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C'

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IPX_004 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2374

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8IPX|1|2|G|1969
8IPX|1|2|A|1970
8IPX|1|2|C|1971
*
8IPX|1|2|G|1995
8IPX|1|2|C|1996
8IPX|1|2|U|1997
8IPX|1|2|A|1998
8IPX|1|2|A|1999
8IPX|1|2|G|2000
8IPX|1|2|G|2001
*
8IPX|1|2|C|2016
8IPX|1|2|A|2017
8IPX|1|2|C|2018

Current chains

Chain 2

28S rRNA

Nearby chains

Chain r

Coiled-coil domain-containing protein 86

Chain v

mRNA turnover protein 4 homolog

Chain y

60S ribosomal protein L12