J3_8IPX_020

3D structure

PDB id

8IPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C'

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8IPX|1|2|U|4882, 8IPX|1|2|A|4938, 8IPX|1|2|C|4940, 8IPX|1|2|A|4943, 8IPX|1|2|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPX|1|2|G|4751
8IPX|1|2|U|4752
8IPX|1|2|U|4753
8IPX|1|2|G|4754
*
8IPX|1|2|C|4879
8IPX|1|2|C|4880
8IPX|1|2|U|4881
8IPX|1|2|U|4882
8IPX|1|2|C|4883
*
8IPX|1|2|G|4936
8IPX|1|2|C|4937
8IPX|1|2|A|4938
8IPX|1|2|C|4939
8IPX|1|2|C|4940
8IPX|1|2|G|4941
8IPX|1|2|C|4942
8IPX|1|2|A|4943
8IPX|1|2|C|4944
8IPX|1|2|G|4945
8IPX|1|2|U|4946
8IPX|1|2|U|4947
8IPX|1|2|C|4948

Current chains

Chain 2

28S rRNA

Nearby chains

Chain S

60S ribosomal protein L14

Chain V

60S ribosomal protein L13a

Chain n

60S ribosomal protein L35a

Chain o

60S ribosomal protein L6