J3_8IPY_009
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 8IPY|1|2|A|4464, 8IPY|1|2|U|4465
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IPY_009 not in the Motif Atlas
- Homologous match to J3_8C3A_011
- Geometric discrepancy: 0.1184
- The information below is about J3_8C3A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8IPY|1|2|U|4463
8IPY|1|2|A|4464
8IPY|1|2|U|4465
8IPY|1|2|C|4466
*
8IPY|1|2|G|4491
8IPY|1|2|U|4492
8IPY|1|2|U|4493
*
8IPY|1|2|A|4507
8IPY|1|2|C|4508
8IPY|1|2|U|4509
8IPY|1|2|A|4510
8IPY|1|2|A|4511
8IPY|1|2|U|4512
8IPY|1|2|A|4513
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 4
- GTP-binding protein 4
- Chain B
- 60S ribosomal protein L3
- Chain J
- Ribosome biogenesis protein NSA2 homolog
- Chain V
- 60S ribosomal protein L13a
- Chain e
- 60S ribosomal protein L23
- Chain u
- Guanine nucleotide-binding protein-like 3
- Chain w
- G Protein Nucleolar 2
- Chain z
- Protein LLP homolog
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