J3_8IPY_016
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IPY_016 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.1718
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8IPY|1|2|U|2440
8IPY|1|2|C|2441
8IPY|1|2|G|2442
8IPY|1|2|G|2443
8IPY|1|2|U|2444
8IPY|1|2|C|2445
*
8IPY|1|2|G|2515
8IPY|1|2|G|2516
8IPY|1|2|A|2517
8IPY|1|2|G|2518
8IPY|1|2|U|2519
*
8IPY|1|2|A|2536
8IPY|1|2|A|2537
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- 60S ribosomal protein L34
- Chain O
- 60S ribosomal protein L38
- Chain P
- 60S ribosomal protein L39
- Chain q
- Pescadillo homolog
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