J3_8JDJ_014
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8JDJ_014 not in the Motif Atlas
- Homologous match to J3_4V88_032
- Geometric discrepancy: 0.2326
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8JDJ|1|w|A|816
8JDJ|1|w|G|817
8JDJ|1|w|A|818
8JDJ|1|w|G|819
*
8JDJ|1|w|C|829
8JDJ|1|w|A|830
8JDJ|1|w|G|831
*
8JDJ|1|w|C|843
8JDJ|1|w|U|844
8JDJ|1|w|G|845
8JDJ|1|w|G|846
8JDJ|1|w|A|847
8JDJ|1|w|U|848
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 1
- 40S ribosomal protein S4, X isoform
- Chain 6
- 40S ribosomal protein S9
- Chain AK
- 40S ribosomal protein S24
Coloring options: