J3_8JDJ_018
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UGGA*UAC*G(G7M)AA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8JDJ_018 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.0895
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8JDJ|1|w|U|1225
8JDJ|1|w|G|1226
8JDJ|1|w|G|1227
8JDJ|1|w|A|1228
*
8JDJ|1|w|U|1530
8JDJ|1|w|A|1531
8JDJ|1|w|C|1532
*
8JDJ|1|w|G|1638
8JDJ|1|w|G7M|1639
8JDJ|1|w|A|1640
8JDJ|1|w|A|1641
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 2
- 40S ribosomal protein S5
- Chain AC
- 40S ribosomal protein S16
- Chain AE
- 40S ribosomal protein S18
- Chain AF
- 40S ribosomal protein S19
- Chain AL
- 40S ribosomal protein S25
- Chain B
- Transfer RNA; tRNA
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