J3_8JDJ_020

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

8JDJ|1|w|G|1274, 8JDJ|1|w|G|1507, 8JDJ|1|w|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8JDJ_020 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1361

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8JDJ|1|w|C|1272
8JDJ|1|w|C|1273
8JDJ|1|w|G|1274
8JDJ|1|w|G|1275
8JDJ|1|w|A|1276
8JDJ|1|w|C|1277
*
8JDJ|1|w|G|1320
8JDJ|1|w|G|1321
8JDJ|1|w|G|1322
8JDJ|1|w|U|1323
8JDJ|1|w|G|1324
*
8JDJ|1|w|U|1504
8JDJ|1|w|U|1505
8JDJ|1|w|A|1506
8JDJ|1|w|G|1507
8JDJ|1|w|A|1508
8JDJ|1|w|U|1509
8JDJ|1|w|G|1510

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 7

40S ribosomal protein S10