J3_8JDJ_038
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- AC*GAGAAUU*ACACU
- Length
- 14 nucleotides
- Bulged bases
- 8JDJ|1|F|A|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8JDJ_038 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.2074
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
8JDJ|1|F|A|44
8JDJ|1|F|C|45
*
8JDJ|1|F|G|58
8JDJ|1|F|A|59
8JDJ|1|F|G|60
8JDJ|1|F|A|61
8JDJ|1|F|A|62
8JDJ|1|F|U|63
8JDJ|1|F|U|64
*
8JDJ|1|F|A|95
8JDJ|1|F|C|96
8JDJ|1|F|A|97
8JDJ|1|F|C|98
8JDJ|1|F|U|99
Current chains
- Chain F
- 5.8S ribosomal RNA
Nearby chains
- Chain c
- 60S ribosomal protein L23a
- Chain m
- 60S ribosomal protein L35
- Chain o
- 60S ribosomal protein L37
- Chain q
- 60S ribosomal protein L39
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