J3_8JDK_005
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GAAG*CC(A2M)UAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8JDK|1|D|U|2788, 8JDK|1|D|A|2789
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8JDK_005 not in the Motif Atlas
- Homologous match to J3_5TBW_009
- Geometric discrepancy: 0.082
- The information below is about J3_5TBW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8JDK|1|D|G|2402
8JDK|1|D|A|2403
8JDK|1|D|A|2404
8JDK|1|D|G|2405
*
8JDK|1|D|C|2785
8JDK|1|D|C|2786
8JDK|1|D|A2M|2787
8JDK|1|D|U|2788
8JDK|1|D|A|2789
8JDK|1|D|U|2790
8JDK|1|D|C|2791
*
8JDK|1|D|G|2800
8JDK|1|D|U|2801
8JDK|1|D|C|2802
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain l
- 60S ribosomal protein L34
- Chain o
- 60S ribosomal protein L37
- Chain q
- 60S ribosomal protein L39
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