J3_8JDK_010

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

8JDK|1|D|A|4464, 8JDK|1|D|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8JDK_010 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.0764

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

8JDK|1|D|U|4463
8JDK|1|D|A|4464
8JDK|1|D|U|4465
8JDK|1|D|C|4466
*
8JDK|1|D|G|4491
8JDK|1|D|U|4492
8JDK|1|D|U|4493
*
8JDK|1|D|A|4507
8JDK|1|D|C|4508
8JDK|1|D|U|4509
8JDK|1|D|A|4510
8JDK|1|D|A|4511
8JDK|1|D|U|4512
8JDK|1|D|A|4513

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain a

60S ribosomal protein L23