J3_8JDK_019

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

8JDK|1|w|G|1274, 8JDK|1|w|G|1507, 8JDK|1|w|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8JDK_019 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1402

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8JDK|1|w|C|1272
8JDK|1|w|C|1273
8JDK|1|w|G|1274
8JDK|1|w|G|1275
8JDK|1|w|A|1276
8JDK|1|w|C|1277
*
8JDK|1|w|G|1320
8JDK|1|w|G|1321
8JDK|1|w|G|1322
8JDK|1|w|U|1323
8JDK|1|w|G|1324
*
8JDK|1|w|U|1504
8JDK|1|w|U|1505
8JDK|1|w|A|1506
8JDK|1|w|G|1507
8JDK|1|w|A|1508
8JDK|1|w|U|1509
8JDK|1|w|G|1510

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 7

40S ribosomal protein S10