J3_8JDK_043
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUU(PSU)
- Length
- 18 nucleotides
- Bulged bases
- 8JDK|1|w|G|991
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8JDK_043 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.1622
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8JDK|1|w|A|938
8JDK|1|w|U|939
8JDK|1|w|U|940
8JDK|1|w|C|941
*
8JDK|1|w|G|985
8JDK|1|w|G|986
8JDK|1|w|A|987
8JDK|1|w|C|988
8JDK|1|w|C|989
8JDK|1|w|A|990
8JDK|1|w|G|991
8JDK|1|w|A|992
8JDK|1|w|G|993
*
8JDK|1|w|C|1000
8JDK|1|w|A|1001
8JDK|1|w|U|1002
8JDK|1|w|U|1003
8JDK|1|w|PSU|1004
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 9
- 40S ribosomal protein S13
- Chain AA
- 40S ribosomal protein S14
- Chain AM
- 40S ribosomal protein S26
- Chain u
- 60S ribosomal protein L37a
- Chain y
- 40S ribosomal protein S3a
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