J3_8JDM_016
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUU(A2M)AG
- Length
- 19 nucleotides
- Bulged bases
- 8JDM|1|w|A|1679
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8JDM_016 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1324
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8JDM|1|w|C|1218
8JDM|1|w|C|1219
8JDM|1|w|A|1220
8JDM|1|w|G|1221
*
8JDM|1|w|C|1645
8JDM|1|w|C|1646
8JDM|1|w|A|1647
8JDM|1|w|G|1648
8JDM|1|w|U|1649
8JDM|1|w|A|1650
8JDM|1|w|A|1651
*
8JDM|1|w|U|1673
8JDM|1|w|G|1674
8JDM|1|w|A|1675
8JDM|1|w|U|1676
8JDM|1|w|U|1677
8JDM|1|w|A2M|1678
8JDM|1|w|A|1679
8JDM|1|w|G|1680
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 2
- 40S ribosomal protein S5
- Chain AC
- 40S ribosomal protein S16
- Chain AO
- 40S ribosomal protein S28
Coloring options: