J3_8JDM_019

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

8JDM|1|w|G|1274, 8JDM|1|w|G|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8JDM_019 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1271

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8JDM|1|w|C|1272
8JDM|1|w|C|1273
8JDM|1|w|G|1274
8JDM|1|w|G|1275
8JDM|1|w|A|1276
8JDM|1|w|C|1277
*
8JDM|1|w|G|1320
8JDM|1|w|G|1321
8JDM|1|w|G|1322
8JDM|1|w|U|1323
8JDM|1|w|G|1324
*
8JDM|1|w|U|1504
8JDM|1|w|U|1505
8JDM|1|w|A|1506
8JDM|1|w|G|1507
8JDM|1|w|A|1508
8JDM|1|w|U|1509
8JDM|1|w|G|1510

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 7

40S ribosomal protein S10