J3_8JDM_042
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUU(PSU)
- Length
- 18 nucleotides
- Bulged bases
- 8JDM|1|w|G|991
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8JDM_042 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.154
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8JDM|1|w|A|938
8JDM|1|w|U|939
8JDM|1|w|U|940
8JDM|1|w|C|941
*
8JDM|1|w|G|985
8JDM|1|w|G|986
8JDM|1|w|A|987
8JDM|1|w|C|988
8JDM|1|w|C|989
8JDM|1|w|A|990
8JDM|1|w|G|991
8JDM|1|w|A|992
8JDM|1|w|G|993
*
8JDM|1|w|C|1000
8JDM|1|w|A|1001
8JDM|1|w|U|1002
8JDM|1|w|U|1003
8JDM|1|w|PSU|1004
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 9
- 40S ribosomal protein S13
- Chain AA
- 40S ribosomal protein S14
- Chain AM
- 40S ribosomal protein S26
- Chain u
- 60S ribosomal protein L37a
- Chain y
- 40S ribosomal protein S3a
Coloring options: