J3_8JSG_009

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8JSG_009 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.3063

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8JSG|1|g|G|46
8JSG|1|g|C|47
*
8JSG|1|g|G|361
8JSG|1|g|G|362
8JSG|1|g|A|363
8JSG|1|g|A|364
8JSG|1|g|U|365
8JSG|1|g|A|366
8JSG|1|g|U|367
*
8JSG|1|g|A|393
8JSG|1|g|G|394
8JSG|1|g|C|395

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain t

Small ribosomal subunit protein uS12

Chain y

30S ribosomal protein S16