J3_8JSH_001

3D structure

PDB id

8JSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-body-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8JSH|1|g|U|871, 8JSH|1|g|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8JSH_001 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1698

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8JSH|1|g|C|826
8JSH|1|g|U|827
8JSH|1|g|U|828
8JSH|1|g|G|829
*
8JSH|1|g|C|857
8JSH|1|g|G|858
8JSH|1|g|G|859
8JSH|1|g|A|860
8JSH|1|g|G|861
*
8JSH|1|g|C|868
8JSH|1|g|G|869
8JSH|1|g|U|870
8JSH|1|g|U|871
8JSH|1|g|A|872
8JSH|1|g|A|873
8JSH|1|g|G|874

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 2

30S ribosomal protein S21

Chain p

30S ribosomal protein S8