3D structure

PDB id
8JSH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 30S-body-IF3 complex from Escherichia coli
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
CGG*CUUGA*UGACG
Length
13 nucleotides
Bulged bases
8JSH|1|g|U|653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8JSH_006 not in the Motif Atlas
Homologous match to J3_5J7L_051
Geometric discrepancy: 0.1883
The information below is about J3_5J7L_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

8JSH|1|g|C|586
8JSH|1|g|G|587
8JSH|1|g|G|588
*
8JSH|1|g|C|651
8JSH|1|g|U|652
8JSH|1|g|U|653
8JSH|1|g|G|654
8JSH|1|g|A|655
*
8JSH|1|g|U|751
8JSH|1|g|G|752
8JSH|1|g|A|753
8JSH|1|g|C|754
8JSH|1|g|G|755

Current chains

Chain g
16S ribosomal RNA

Nearby chains

Chain P
30S ribosomal protein S17
Chain p
30S ribosomal protein S8
Chain t
Small ribosomal subunit protein uS12
Chain u
30S ribosomal protein S15

Coloring options:


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