J3_8K2B_001

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

8K2B|1|L1|G|248, 8K2B|1|L1|G|332, 8K2B|1|L1|A|333

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8K2B_001 not in the Motif Atlas

Homologous match to J3_8VTW_001

Geometric discrepancy: 0.121

The information below is about J3_8VTW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8K2B|1|L1|C|245
8K2B|1|L1|G|246
8K2B|1|L1|A|247
8K2B|1|L1|G|248
8K2B|1|L1|C|249
8K2B|1|L1|U|250
8K2B|1|L1|A|251
*
8K2B|1|L1|U|313
8K2B|1|L1|A|314
8K2B|1|L1|G|315
*
8K2B|1|L1|C|331
8K2B|1|L1|G|332
8K2B|1|L1|A|333
8K2B|1|L1|G|334

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain Lh

Large ribosomal subunit protein bL34m

Chain Lo

Large ribosomal subunit protein mL41