J3_8K2C_005

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8K2C|1|L5|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8K2C_005 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.0774

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8K2C|1|L5|C|2393
8K2C|1|L5|G|2394
8K2C|1|L5|A|2395
8K2C|1|L5|A|2396
8K2C|1|L5|G|2397
8K2C|1|L5|U|2398
8K2C|1|L5|G|2399
*
8K2C|1|L5|C|2805
8K2C|1|L5|A|2806
8K2C|1|L5|A|2807
*
8K2C|1|L5|U|2819
8K2C|1|L5|C|2820
8K2C|1|L5|U|2821
8K2C|1|L5|G|2822

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34