J3_8K2D_007
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUUG*CUUAU*AGACAUU
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K2D_007 not in the Motif Atlas
- Geometric match to J3_4V9F_007
- Geometric discrepancy: 0.2511
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97609.1
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
8K2D|1|C1|A|2432
8K2D|1|C1|U|2433
8K2D|1|C1|U|2434
8K2D|1|C1|G|2435
*
8K2D|1|C1|C|2512
8K2D|1|C1|U|2513
8K2D|1|C1|U|2514
8K2D|1|C1|A|2515
8K2D|1|C1|U|2516
*
8K2D|1|C1|A|2591
8K2D|1|C1|G|2592
8K2D|1|C1|A|2593
8K2D|1|C1|C|2594
8K2D|1|C1|A|2595
8K2D|1|C1|U|2596
8K2D|1|C1|U|2597
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LA
- Large ribosomal subunit protein uL2A
- Chain LG
- Large ribosomal subunit protein eL8A
- Chain LN
- Large ribosomal subunit protein eL15A
- Chain Li
- Large ribosomal subunit protein eL36A
Coloring options: