J3_8K2D_019
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K2D_019 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.4444
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_99563.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8K2D|1|C2|U|1283
8K2D|1|C2|C|1284
8K2D|1|C2|U|1285
8K2D|1|C2|U|1286
8K2D|1|C2|A|1287
8K2D|1|C2|G|1288
*
8K2D|1|C2|C|1327
8K2D|1|C2|G|1328
8K2D|1|C2|A|1329
8K2D|1|C2|G|1330
8K2D|1|C2|A|1331
8K2D|1|C2|C|1332
*
8K2D|1|C2|G|1419
8K2D|1|C2|C|1420
8K2D|1|C2|A|1421
8K2D|1|C2|A|1422
8K2D|1|C2|U|1423
8K2D|1|C2|A|1424
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SQ
- Small ribosomal subunit protein uS9A
- Chain SR
- Small ribosomal subunit protein eS17A
- Chain SU
- Small ribosomal subunit protein uS10
- Chain Sd
- Small ribosomal subunit protein uS14A
Coloring options: