J3_8K2D_025
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K2D_025 not in the Motif Atlas
- Geometric match to J3_8C3A_048
- Geometric discrepancy: 0.1008
- The information below is about J3_8C3A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
8K2D|1|C1|A|369
8K2D|1|C1|U|370
8K2D|1|C1|G|371
8K2D|1|C1|A|372
8K2D|1|C1|A|373
8K2D|1|C1|A|374
8K2D|1|C1|A|375
8K2D|1|C1|G|376
*
8K2D|1|C1|C|403
8K2D|1|C1|G|404
*
8K2D|1|C3|C|19
8K2D|1|C3|U|20
Current chains
- Chain C1
- 23S rRNA
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4A
- Chain LP
- Large ribosomal subunit protein uL22A
- Chain LY
- Large ribosomal subunit protein uL24A
- Chain Ll
- Large ribosomal subunit protein eL39
Coloring options: