J3_8K4E_002

3D structure

PDB id

8K4E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8K4E|1|A|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8K4E_002 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0947

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8K4E|1|A|C|826
8K4E|1|A|U|827
8K4E|1|A|U|828
8K4E|1|A|G|829
*
8K4E|1|A|C|857
8K4E|1|A|G|858
8K4E|1|A|G|859
8K4E|1|A|A|860
8K4E|1|A|G|861
*
8K4E|1|A|C|868
8K4E|1|A|G|869
8K4E|1|A|U|870
8K4E|1|A|U|871
8K4E|1|A|A|872
8K4E|1|A|A|873
8K4E|1|A|G|874

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain H

30S ribosomal protein S8

Chain X

30S ribosomal protein S21