J3_8K4E_009
3D structure
- PDB id
- 8K4E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAUG*CGUAGUCC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 8K4E|1|A|U|1240, 8K4E|1|A|C|1302
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K4E_009 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.2475
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
8K4E|1|A|C|1237
8K4E|1|A|A|1238
8K4E|1|A|A|1239
8K4E|1|A|U|1240
8K4E|1|A|G|1241
*
8K4E|1|A|C|1296
8K4E|1|A|G|1297
8K4E|1|A|U|1298
8K4E|1|A|A|1299
8K4E|1|A|G|1300
8K4E|1|A|U|1301
8K4E|1|A|C|1302
8K4E|1|A|C|1303
*
8K4E|1|A|G|1334
8K4E|1|A|U|1335
8K4E|1|A|C|1336
8K4E|1|A|G|1337
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain M
- 30S ribosomal protein S13
Coloring options: