J3_8K82_002

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

8K82|1|C1|A|817, 8K82|1|C1|G|924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8K82_002 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.072

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8K82|1|C1|U|814
8K82|1|C1|G|815
8K82|1|C1|A|816
8K82|1|C1|A|817
8K82|1|C1|C|818
8K82|1|C1|U|819
8K82|1|C1|A|820
*
8K82|1|C1|U|905
8K82|1|C1|A|906
8K82|1|C1|G|907
*
8K82|1|C1|C|923
8K82|1|C1|G|924
8K82|1|C1|A|925
8K82|1|C1|A|926

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2A

Chain LN

Large ribosomal subunit protein eL15A

Chain Lj

Large ribosomal subunit protein eL37A