J3_8K82_018

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

8K82|1|C2|A|1217, 8K82|1|C2|G|1445, 8K82|1|C2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8K82_018 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1478

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8K82|1|C2|C|1215
8K82|1|C2|C|1216
8K82|1|C2|A|1217
8K82|1|C2|G|1218
8K82|1|C2|A|1219
8K82|1|C2|C|1220
*
8K82|1|C2|G|1263
8K82|1|C2|G|1264
8K82|1|C2|G|1265
8K82|1|C2|U|1266
8K82|1|C2|G|1267
*
8K82|1|C2|U|1442
8K82|1|C2|U|1443
8K82|1|C2|A|1444
8K82|1|C2|G|1445
8K82|1|C2|A|1446
8K82|1|C2|C|1447
8K82|1|C2|G|1448

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SK

Small ribosomal subunit protein eS10A

Chain Sd

Small ribosomal subunit protein uS14A