J3_8K82_023
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUAUG*CGUCAUAGAG*CGUGUG
- Length
- 21 nucleotides
- Bulged bases
- 8K82|1|C1|U|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K82_023 not in the Motif Atlas
- Homologous match to J3_8P9A_044
- Geometric discrepancy: 0.0926
- The information below is about J3_8P9A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97456.1
- Basepair signature
- cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8K82|1|C1|C|185
8K82|1|C1|U|186
8K82|1|C1|A|187
8K82|1|C1|U|188
8K82|1|C1|G|189
*
8K82|1|C1|C|205
8K82|1|C1|G|206
8K82|1|C1|U|207
8K82|1|C1|C|208
8K82|1|C1|A|209
8K82|1|C1|U|210
8K82|1|C1|A|211
8K82|1|C1|G|212
8K82|1|C1|A|213
8K82|1|C1|G|214
*
8K82|1|C1|C|226
8K82|1|C1|G|227
8K82|1|C1|U|228
8K82|1|C1|G|229
8K82|1|C1|U|230
8K82|1|C1|G|231
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain C3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- Large ribosomal subunit protein uL4A
- Chain LY
- Large ribosomal subunit protein uL24A
Coloring options: