J3_8K82_030
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K82_030 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.068
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8K82|1|C1|U|1526
8K82|1|C1|C|1527
8K82|1|C1|G|1528
8K82|1|C1|A|1529
8K82|1|C1|U|1530
8K82|1|C1|C|1531
*
8K82|1|C1|G|1591
8K82|1|C1|G|1592
8K82|1|C1|A|1593
8K82|1|C1|A|1594
8K82|1|C1|U|1595
*
8K82|1|C1|A|1612
8K82|1|C1|A|1613
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain C3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LX
- Large ribosomal subunit protein uL23
- Chain Lg
- Large ribosomal subunit protein eL34A
- Chain Lk
- Large ribosomal subunit protein eL38
- Chain Ll
- Large ribosomal subunit protein eL39
Coloring options: