J3_8OEQ_023
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 8OEQ|1|1|A|2859, 8OEQ|1|1|U|2860
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OEQ_023 not in the Motif Atlas
- Homologous match to J3_8C3A_011
- Geometric discrepancy: 0.0374
- The information below is about J3_8C3A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OEQ|1|1|U|2858
8OEQ|1|1|A|2859
8OEQ|1|1|U|2860
8OEQ|1|1|C|2861
*
8OEQ|1|1|G|2886
8OEQ|1|1|U|2887
8OEQ|1|1|U|2888
*
8OEQ|1|1|A|2902
8OEQ|1|1|C|2903
8OEQ|1|1|U|2904
8OEQ|1|1|A|2905
8OEQ|1|1|A|2906
8OEQ|1|1|U|2907
8OEQ|1|1|A|2908
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 6
- 60S ribosomal protein L23-A
- Chain k
- 60S ribosomal protein L3
- Chain w
- Ribosomal protein L13
Coloring options: