J3_8OEQ_035
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UC*GAGGACUGCG*CUAGGA
- Length
- 18 nucleotides
- Bulged bases
- 8OEQ|1|AS|U|605
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OEQ_035 not in the Motif Atlas
- Homologous match to J3_8C3A_050
- Geometric discrepancy: 0.0627
- The information below is about J3_8C3A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8OEQ|1|AS|U|497
8OEQ|1|AS|C|498
*
8OEQ|1|AS|G|586
8OEQ|1|AS|A|587
8OEQ|1|AS|G|588
8OEQ|1|AS|G|589
8OEQ|1|AS|A|590
8OEQ|1|AS|C|591
8OEQ|1|AS|U|592
8OEQ|1|AS|G|593
8OEQ|1|AS|C|594
8OEQ|1|AS|G|595
*
8OEQ|1|AS|C|604
8OEQ|1|AS|U|605
8OEQ|1|AS|A|606
8OEQ|1|AS|G|607
8OEQ|1|AS|G|608
8OEQ|1|AS|A|609
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AY
- 60S ribosomal protein L4-B
- Chain BA
- 60S ribosomal protein L6
- Chain BB
- 60S ribosomal protein L7-A
- Chain BZ
- 60S ribosomal protein L32
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