J3_8OEQ_036
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8OEQ|1|AS|A|813, 8OEQ|1|AS|G|920, 8OEQ|1|AS|A|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OEQ_036 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.0634
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8OEQ|1|AS|U|810
8OEQ|1|AS|G|811
8OEQ|1|AS|A|812
8OEQ|1|AS|A|813
8OEQ|1|AS|C|814
8OEQ|1|AS|U|815
8OEQ|1|AS|A|816
*
8OEQ|1|AS|U|901
8OEQ|1|AS|A|902
8OEQ|1|AS|G|903
*
8OEQ|1|AS|C|919
8OEQ|1|AS|G|920
8OEQ|1|AS|A|921
8OEQ|1|AS|A|922
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AW
- 60S ribosomal protein L2-B
- Chain BI
- 60S ribosomal protein L15-A
- Chain CE
- 60S ribosomal protein L37-B
- Chain CG
- 60S ribosomal protein L39
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