J3_8OEQ_073
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UAGAUAAAAAAUCAAUG*CUCUUUG*CAUA
- Length
- 28 nucleotides
- Bulged bases
- 8OEQ|1|CM|A|215, 8OEQ|1|CM|A|216, 8OEQ|1|CM|U|238
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OEQ_073 not in the Motif Atlas
- Homologous match to J3_8C3A_084
- Geometric discrepancy: 0.1645
- The information below is about J3_8C3A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67192.1
- Basepair signature
- cWW-F-F-tSH-F-cWW-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8OEQ|1|CM|U|210
8OEQ|1|CM|A|211
8OEQ|1|CM|G|212
8OEQ|1|CM|A|213
8OEQ|1|CM|U|214
8OEQ|1|CM|A|215
8OEQ|1|CM|A|216
8OEQ|1|CM|A|217
8OEQ|1|CM|A|218
8OEQ|1|CM|A|219
8OEQ|1|CM|A|220
8OEQ|1|CM|U|221
8OEQ|1|CM|C|222
8OEQ|1|CM|A|223
8OEQ|1|CM|A|224
8OEQ|1|CM|U|225
8OEQ|1|CM|G|226
*
8OEQ|1|CM|C|235
8OEQ|1|CM|U|236
8OEQ|1|CM|C|237
8OEQ|1|CM|U|238
8OEQ|1|CM|U|239
8OEQ|1|CM|U|240
8OEQ|1|CM|G|241
*
8OEQ|1|CM|C|248
8OEQ|1|CM|A|249
8OEQ|1|CM|U|250
8OEQ|1|CM|A|251
Current chains
- Chain CM
- 18S ribosomal RNA
Nearby chains
- Chain CR
- 40S ribosomal protein S4
- Chain CT
- 40S ribosomal protein S6
- Chain CV
- 40S ribosomal protein S8
- Chain CY
- 40S ribosomal protein S11A
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