J3_8OEQ_079
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OEQ_079 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.1083
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8OEQ|1|CM|U|1153
8OEQ|1|CM|G|1154
8OEQ|1|CM|G|1155
8OEQ|1|CM|A|1156
*
8OEQ|1|CM|U|1454
8OEQ|1|CM|A|1455
8OEQ|1|CM|C|1456
*
8OEQ|1|CM|G|1561
8OEQ|1|CM|G|1562
8OEQ|1|CM|A|1563
8OEQ|1|CM|A|1564
Current chains
- Chain CM
- 18S ribosomal RNA
Nearby chains
- Chain CS
- Ribosomal protein S7
- Chain DD
- 40S ribosomal protein S16
- Chain DF
- 40S ribosomal protein S18-B
- Chain DG
- 40S ribosomal protein S19-A
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