J3_8OEQ_081

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

8OEQ|1|CM|A|1202, 8OEQ|1|CM|G|1431, 8OEQ|1|CM|C|1433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OEQ_081 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.0648

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8OEQ|1|CM|C|1200
8OEQ|1|CM|C|1201
8OEQ|1|CM|A|1202
8OEQ|1|CM|G|1203
8OEQ|1|CM|A|1204
8OEQ|1|CM|C|1205
*
8OEQ|1|CM|G|1248
8OEQ|1|CM|G|1249
8OEQ|1|CM|G|1250
8OEQ|1|CM|U|1251
8OEQ|1|CM|G|1252
*
8OEQ|1|CM|U|1428
8OEQ|1|CM|U|1429
8OEQ|1|CM|A|1430
8OEQ|1|CM|G|1431
8OEQ|1|CM|A|1432
8OEQ|1|CM|C|1433
8OEQ|1|CM|G|1434

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain CX

40S ribosomal protein S10-A

Chain DQ

40S ribosomal protein S29A

Chain DS

Ubiquitin-40S ribosomal protein S31 fusion protein