J3_8OH6_027
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 8OH6|1|4|U|60, 8OH6|1|4|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OH6_027 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.0546
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
8OH6|1|4|A|44
8OH6|1|4|C|45
*
8OH6|1|4|G|58
8OH6|1|4|A|59
8OH6|1|4|U|60
8OH6|1|4|A|61
8OH6|1|4|C|62
8OH6|1|4|G|63
8OH6|1|4|U|64
*
8OH6|1|4|A|96
8OH6|1|4|A|97
8OH6|1|4|U|98
8OH6|1|4|C|99
8OH6|1|4|U|100
Current chains
- Chain 4
- 5.8S
Nearby chains
- Chain 8
- 60S ribosomal protein L25
- Chain AI
- Ribosomal protein L29
- Chain AK
- 60S ribosomal protein L37-B
- Chain AM
- 60S ribosomal protein L39
Coloring options: