J3_8OH6_040
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GAAA*UCAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8OH6|1|AS|U|1836, 8OH6|1|AS|A|1837
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OH6_040 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.0615
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8OH6|1|AS|G|1484
8OH6|1|AS|A|1485
8OH6|1|AS|A|1486
8OH6|1|AS|A|1487
*
8OH6|1|AS|U|1833
8OH6|1|AS|C|1834
8OH6|1|AS|A|1835
8OH6|1|AS|U|1836
8OH6|1|AS|A|1837
8OH6|1|AS|A|1838
8OH6|1|AS|C|1839
*
8OH6|1|AS|G|1848
8OH6|1|AS|U|1849
8OH6|1|AS|C|1850
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AU
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CB
- 60S ribosomal protein L34-B
- Chain CE
- 60S ribosomal protein L37-B
- Chain CG
- 60S ribosomal protein L39
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