J3_8OH6_043
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CA*UAACU*AG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OH6_043 not in the Motif Atlas
- Homologous match to J3_8C3A_054
- Geometric discrepancy: 0.0818
- The information below is about J3_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_16991.1
- Basepair signature
- cWW-F-cWW-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8OH6|1|AS|C|1627
8OH6|1|AS|A|1628
*
8OH6|1|AS|U|1637
8OH6|1|AS|A|1638
8OH6|1|AS|A|1639
8OH6|1|AS|C|1640
8OH6|1|AS|U|1641
*
8OH6|1|AS|A|1806
8OH6|1|AS|G|1807
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain BU
- 60S ribosomal protein L27
- Chain CB
- 60S ribosomal protein L34-B
- Chain CF
- 60S ribosomal protein L38
Coloring options: