J3_8OH6_064
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 8OH6|1|B|A|1202, 8OH6|1|B|G|1431, 8OH6|1|B|C|1433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OH6_064 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.068
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8OH6|1|B|C|1200
8OH6|1|B|C|1201
8OH6|1|B|A|1202
8OH6|1|B|G|1203
8OH6|1|B|A|1204
8OH6|1|B|C|1205
*
8OH6|1|B|G|1248
8OH6|1|B|G|1249
8OH6|1|B|G|1250
8OH6|1|B|U|1251
8OH6|1|B|G|1252
*
8OH6|1|B|U|1428
8OH6|1|B|U|1429
8OH6|1|B|A|1430
8OH6|1|B|G|1431
8OH6|1|B|A|1432
8OH6|1|B|C|1433
8OH6|1|B|G|1434
Current chains
- Chain B
- 18S
Nearby chains
- Chain M
- 40S ribosomal protein S10-A
- Chain f
- 40S ribosomal protein S29A
- Chain h
- Ubiquitin-40S ribosomal protein S31 fusion protein
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