J3_8OH6_069
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 8OH6|1|B|U|1459, 8OH6|1|B|G|1526
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OH6_069 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.0516
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8OH6|1|B|C|1456
8OH6|1|B|A|1457
8OH6|1|B|C|1458
8OH6|1|B|U|1459
8OH6|1|B|G|1460
*
8OH6|1|B|C|1520
8OH6|1|B|G|1521
8OH6|1|B|U|1522
8OH6|1|B|G|1523
8OH6|1|B|C|1524
8OH6|1|B|U|1525
8OH6|1|B|G|1526
8OH6|1|B|G|1527
*
8OH6|1|B|C|1558
8OH6|1|B|G|1559
8OH6|1|B|A|1560
8OH6|1|B|G|1561
Current chains
- Chain B
- 18S
Nearby chains
- Chain H
- Ribosomal protein S7
- Chain U
- 40S ribosomal protein S18-B
- Chain V
- 40S ribosomal protein S19-A
- Chain b
- 40S ribosomal protein S25
Coloring options: