J3_8OH6_071

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

8OH6|1|CM|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OH6_071 not in the Motif Atlas

Homologous match to J3_8C3A_083

Geometric discrepancy: 0.043

The information below is about J3_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.2

Basepair signature

cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW

Number of instances in this motif group

5

Unit IDs

8OH6|1|CM|A|41
8OH6|1|CM|G|42
8OH6|1|CM|A|43
8OH6|1|CM|U|44
8OH6|1|CM|U|45
8OH6|1|CM|A|46
8OH6|1|CM|A|47
8OH6|1|CM|G|48
*
8OH6|1|CM|C|429
8OH6|1|CM|G|430
8OH6|1|CM|C|431
8OH6|1|CM|G|432
8OH6|1|CM|C|433
8OH6|1|CM|A|434
8OH6|1|CM|A|435
8OH6|1|CM|A|436
8OH6|1|CM|U|437
*
8OH6|1|CM|A|462
8OH6|1|CM|G|463
8OH6|1|CM|U|464

Current chains

Chain CM

18S

Nearby chains

Chain CW

Ribosomal protein S4

Chain DK

Ribosomal protein S23 (S12)