J3_8OH6_073
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 8OH6|1|CM|U|849
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OH6_073 not in the Motif Atlas
- Homologous match to J3_8C3A_034
- Geometric discrepancy: 0.053
- The information below is about J3_8C3A_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.2
- Basepair signature
- cWW-tSH-cWW-tHW-cWW-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
8OH6|1|CM|U|631
8OH6|1|CM|G|632
8OH6|1|CM|A|633
*
8OH6|1|CM|U|846
8OH6|1|CM|A|847
8OH6|1|CM|A|848
8OH6|1|CM|U|849
8OH6|1|CM|A|850
8OH6|1|CM|G|851
*
8OH6|1|CM|C|947
8OH6|1|CM|A|948
8OH6|1|CM|U|949
8OH6|1|CM|U|950
8OH6|1|CM|A|951
Current chains
- Chain CM
- 18S
Nearby chains
- Chain CU
- 40S ribosomal protein S7
- Chain CY
- 40S ribosomal protein S11A
- Chain DA
- 40S ribosomal protein S13
- Chain DJ
- 40S ribosomal protein S22-A
- Chain DK
- Ribosomal protein S23 (S12)
- Chain DO
- 40S ribosomal protein S27
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