J3_8OH6_080

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

8OH6|1|CM|A|1202, 8OH6|1|CM|G|1431, 8OH6|1|CM|C|1433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OH6_080 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.07

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8OH6|1|CM|C|1200
8OH6|1|CM|C|1201
8OH6|1|CM|A|1202
8OH6|1|CM|G|1203
8OH6|1|CM|A|1204
8OH6|1|CM|C|1205
*
8OH6|1|CM|G|1248
8OH6|1|CM|G|1249
8OH6|1|CM|G|1250
8OH6|1|CM|U|1251
8OH6|1|CM|G|1252
*
8OH6|1|CM|U|1428
8OH6|1|CM|U|1429
8OH6|1|CM|A|1430
8OH6|1|CM|G|1431
8OH6|1|CM|A|1432
8OH6|1|CM|C|1433
8OH6|1|CM|G|1434

Current chains

Chain CM

18S

Nearby chains

Chain CX

40S ribosomal protein S10-A

Chain DQ

40S ribosomal protein S29A

Chain DS

Ubiquitin-40S ribosomal protein S31 fusion protein