J3_8OI5_001
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGAAG*CGACG
- Length
- 26 nucleotides
- Bulged bases
- 8OI5|1|1|U|116, 8OI5|1|1|G|119, 8OI5|1|1|A|120, 8OI5|1|1|A|155
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OI5_001 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.0409
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8OI5|1|1|C|112
8OI5|1|1|A|113
8OI5|1|1|A|114
8OI5|1|1|A|115
8OI5|1|1|U|116
8OI5|1|1|U|117
8OI5|1|1|U|118
8OI5|1|1|G|119
8OI5|1|1|A|120
8OI5|1|1|A|121
8OI5|1|1|A|122
*
8OI5|1|1|U|148
8OI5|1|1|A|149
8OI5|1|1|A|150
8OI5|1|1|U|151
8OI5|1|1|U|152
8OI5|1|1|U|153
8OI5|1|1|G|154
8OI5|1|1|A|155
8OI5|1|1|A|156
8OI5|1|1|G|157
*
8OI5|1|1|C|263
8OI5|1|1|G|264
8OI5|1|1|A|265
8OI5|1|1|C|266
8OI5|1|1|G|267
Current chains
- Chain 1
- 25S
Nearby chains
- Chain AI
- Ribosomal protein L29
- Chain AJ
- 60S ribosomal protein L36
- Chain p
- 60S ribosomal protein L8
- Chain t
- 60S ribosomal protein L13
- Chain v
- 60S ribosomal protein L15-A
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